FastQCFastQC Report
Tue 9 Sep 2025
Anammox-seeding-sludge_S115_R2_001.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameAnammox-seeding-sludge_S115_R2_001.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences111142
Total Bases27.8 Mbp
Sequences flagged as poor quality0
Sequence length139-251
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG1620.14575947886487556No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)